histocartography.preprocessing.assignment_matrix module¶
This module handles the cell-to-tissue assignment
Summary¶
Classes:
Assigning low-level instances to high-level instances using instance maps. |
- class AssignmnentMatrixBuilder(save_path: Union[None, str, pathlib.Path] = None, precompute: bool = True, link_path: Union[None, str, pathlib.Path] = None, precompute_path: Union[None, str, pathlib.Path] = None)[source]¶
Bases:
histocartography.pipeline.PipelineStep
Assigning low-level instances to high-level instances using instance maps.
Reference¶
If you use histocartography in your projects, please cite the following:
@inproceedings{pati2021,
title = {Hierarchical Graph Representations for Digital Pathology},
author = {Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani},
booktitle = {https://arxiv.org/pdf/2102.11057},
year = {2021}
}